Can we either bypass each track individually from being passed through the master FX
Not that I know of.
If it’s for mixing purposes I think it’s impossible. If for example you want to send a specific track through master FX to re-sample you can solo that track and record it through the Ear function with the master effect applied for that track only.
It’s a shame as I was wanting to use the fx only on maybe 2 of the tracks not all, like if I have reverb on everything it sounds to muddy, normally one would have the option to send a track to master fx 
shame But I’m sure I’ll find a workaround, might just forget about the master fx and import all tracks into korg Gadget to add extra FX there 